J3_6VYU_027

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6VYU|1|D|C|48, 6VYU|1|D|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_027 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0659

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VYU|1|D|G|46
6VYU|1|D|C|47
6VYU|1|D|C|48
6VYU|1|D|U|49
6VYU|1|D|A|50
6VYU|1|D|A|51
6VYU|1|D|C|52
*
6VYU|1|D|G|359
6VYU|1|D|G|360
6VYU|1|D|G|361
6VYU|1|D|G|362
6VYU|1|D|A|363
6VYU|1|D|A|364
6VYU|1|D|U|365
6VYU|1|D|A|366
6VYU|1|D|U|367
*
6VYU|1|D|A|393
6VYU|1|D|G|394
6VYU|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16