J3_6VYU_032

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6VYU|1|a|A|504, 6VYU|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYU_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.103

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6VYU|1|a|G|30
6VYU|1|a|C|31
*
6VYU|1|a|G|474
6VYU|1|a|C|475
6VYU|1|a|G|476
6VYU|1|a|A|477
6VYU|1|a|A|478
6VYU|1|a|A|479
6VYU|1|a|A|480
6VYU|1|a|G|481
6VYU|1|a|A|482
6VYU|1|a|A|483
6VYU|1|a|C|484
*
6VYU|1|a|G|496
6VYU|1|a|A|497
6VYU|1|a|G|498
6VYU|1|a|U|499
6VYU|1|a|G|500
6VYU|1|a|A|501
6VYU|1|a|A|502
6VYU|1|a|A|503
6VYU|1|a|A|504
6VYU|1|a|A|505
6VYU|1|a|G|506
6VYU|1|a|A|507
6VYU|1|a|A|508
6VYU|1|a|C|509
6VYU|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20