J3_6VYW_004

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6VYW|1|D|U|871, 6VYW|1|D|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYW_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0724

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6VYW|1|D|C|826
6VYW|1|D|U|827
6VYW|1|D|U|828
6VYW|1|D|G|829
*
6VYW|1|D|C|857
6VYW|1|D|G|858
6VYW|1|D|G|859
6VYW|1|D|A|860
6VYW|1|D|G|861
*
6VYW|1|D|C|868
6VYW|1|D|G|869
6VYW|1|D|U|870
6VYW|1|D|U|871
6VYW|1|D|A|872
6VYW|1|D|A|873
6VYW|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8