J3_6VYX_004
3D structure
- PDB id
- 6VYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6VYX|1|D|U|871, 6VYX|1|D|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYX_004 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.0723
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6VYX|1|D|C|826
6VYX|1|D|U|827
6VYX|1|D|U|828
6VYX|1|D|G|829
*
6VYX|1|D|C|857
6VYX|1|D|G|858
6VYX|1|D|G|859
6VYX|1|D|A|860
6VYX|1|D|G|861
*
6VYX|1|D|C|868
6VYX|1|D|G|869
6VYX|1|D|U|870
6VYX|1|D|U|871
6VYX|1|D|A|872
6VYX|1|D|A|873
6VYX|1|D|G|874
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S21
- Chain G
- 30S ribosomal protein S2
- Chain N
- 30S ribosomal protein S8
Coloring options: