J3_6VYX_027

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6VYX|1|D|C|48, 6VYX|1|D|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYX_027 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0659

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VYX|1|D|G|46
6VYX|1|D|C|47
6VYX|1|D|C|48
6VYX|1|D|U|49
6VYX|1|D|A|50
6VYX|1|D|A|51
6VYX|1|D|C|52
*
6VYX|1|D|G|359
6VYX|1|D|G|360
6VYX|1|D|G|361
6VYX|1|D|G|362
6VYX|1|D|A|363
6VYX|1|D|A|364
6VYX|1|D|U|365
6VYX|1|D|A|366
6VYX|1|D|U|367
*
6VYX|1|D|A|393
6VYX|1|D|G|394
6VYX|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16