3D structure

PDB id
6VYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
9.9 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6VYX|1|a|A|504, 6VYX|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VYX_032 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1031
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6VYX|1|a|G|30
6VYX|1|a|C|31
*
6VYX|1|a|G|474
6VYX|1|a|C|475
6VYX|1|a|G|476
6VYX|1|a|A|477
6VYX|1|a|A|478
6VYX|1|a|A|479
6VYX|1|a|A|480
6VYX|1|a|G|481
6VYX|1|a|A|482
6VYX|1|a|A|483
6VYX|1|a|C|484
*
6VYX|1|a|G|496
6VYX|1|a|A|497
6VYX|1|a|G|498
6VYX|1|a|U|499
6VYX|1|a|G|500
6VYX|1|a|A|501
6VYX|1|a|A|502
6VYX|1|a|A|503
6VYX|1|a|A|504
6VYX|1|a|A|505
6VYX|1|a|G|506
6VYX|1|a|A|507
6VYX|1|a|A|508
6VYX|1|a|C|509
6VYX|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22
Chain 3
50S ribosomal protein L24
Chain z
50S ribosomal protein L20

Coloring options:


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