J3_6VYY_012

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6VYY|1|D|U|1240, 6VYY|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYY_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1206

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6VYY|1|D|C|1237
6VYY|1|D|A|1238
6VYY|1|D|A|1239
6VYY|1|D|U|1240
6VYY|1|D|G|1241
*
6VYY|1|D|C|1296
6VYY|1|D|G|1297
6VYY|1|D|U|1298
6VYY|1|D|A|1299
6VYY|1|D|G|1300
6VYY|1|D|U|1301
6VYY|1|D|C|1302
6VYY|1|D|C|1303
*
6VYY|1|D|G|1334
6VYY|1|D|U|1335
6VYY|1|D|C|1336
6VYY|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13