J3_6VYY_019

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6VYY|1|a|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYY_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1109

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6VYY|1|a|C|1306
6VYY|1|a|A|1307
6VYY|1|a|A|1308
6VYY|1|a|G|1309
*
6VYY|1|a|C|1605
6VYY|1|a|C|1606
6VYY|1|a|C|1607
6VYY|1|a|A|1608
6VYY|1|a|A|1609
6VYY|1|a|A|1610
6VYY|1|a|C|1611
*
6VYY|1|a|G|1620
6VYY|1|a|U|1621
6VYY|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34