J3_6VYY_027

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6VYY|1|D|C|48, 6VYY|1|D|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYY_027 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0659

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VYY|1|D|G|46
6VYY|1|D|C|47
6VYY|1|D|C|48
6VYY|1|D|U|49
6VYY|1|D|A|50
6VYY|1|D|A|51
6VYY|1|D|C|52
*
6VYY|1|D|G|359
6VYY|1|D|G|360
6VYY|1|D|G|361
6VYY|1|D|G|362
6VYY|1|D|A|363
6VYY|1|D|A|364
6VYY|1|D|U|365
6VYY|1|D|A|366
6VYY|1|D|U|367
*
6VYY|1|D|A|393
6VYY|1|D|G|394
6VYY|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16