J3_6VYY_028
3D structure
- PDB id
- 6VYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 6VYY|1|D|U|653
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYY_028 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.0785
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6VYY|1|D|C|586
6VYY|1|D|G|587
6VYY|1|D|G|588
*
6VYY|1|D|C|651
6VYY|1|D|U|652
6VYY|1|D|U|653
6VYY|1|D|G|654
6VYY|1|D|A|655
*
6VYY|1|D|U|751
6VYY|1|D|G|752
6VYY|1|D|A|753
6VYY|1|D|C|754
6VYY|1|D|G|755
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S8
- Chain R
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
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