J3_6VZ5_032
3D structure
- PDB id
- 6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6VZ5|1|a|A|504, 6VZ5|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VZ5_032 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1031
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6VZ5|1|a|G|30
6VZ5|1|a|C|31
*
6VZ5|1|a|G|474
6VZ5|1|a|C|475
6VZ5|1|a|G|476
6VZ5|1|a|A|477
6VZ5|1|a|A|478
6VZ5|1|a|A|479
6VZ5|1|a|A|480
6VZ5|1|a|G|481
6VZ5|1|a|A|482
6VZ5|1|a|A|483
6VZ5|1|a|C|484
*
6VZ5|1|a|G|496
6VZ5|1|a|A|497
6VZ5|1|a|G|498
6VZ5|1|a|U|499
6VZ5|1|a|G|500
6VZ5|1|a|A|501
6VZ5|1|a|A|502
6VZ5|1|a|A|503
6VZ5|1|a|A|504
6VZ5|1|a|A|505
6VZ5|1|a|G|506
6VZ5|1|a|A|507
6VZ5|1|a|A|508
6VZ5|1|a|C|509
6VZ5|1|a|C|510
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain 3
- 50S ribosomal protein L24
- Chain z
- 50S ribosomal protein L20
Coloring options: