J3_6W2T_005
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W2T_005 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1981
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6W2T|1|a|A|816
6W2T|1|a|G|817
6W2T|1|a|A|818
6W2T|1|a|G|819
*
6W2T|1|a|C|829
6W2T|1|a|A|830
6W2T|1|a|G|831
*
6W2T|1|a|C|843
6W2T|1|a|U|844
6W2T|1|a|G|845
6W2T|1|a|G|846
6W2T|1|a|A|847
6W2T|1|a|U|848
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain K
- uS4
- Chain Z
- eS24
Coloring options: