J3_6W2T_008
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W2T_008 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1279
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6W2T|1|a|C|1218
6W2T|1|a|C|1219
6W2T|1|a|A|1220
6W2T|1|a|G|1221
*
6W2T|1|a|C|1645
6W2T|1|a|C|1646
6W2T|1|a|A|1647
6W2T|1|a|G|1648
6W2T|1|a|U|1649
6W2T|1|a|A|1650
6W2T|1|a|A|1651
*
6W2T|1|a|U|1673
6W2T|1|a|G|1674
6W2T|1|a|A|1675
6W2T|1|a|U|1676
6W2T|1|a|U|1677
6W2T|1|a|A|1678
6W2T|1|a|A|1679
6W2T|1|a|G|1680
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain R
- uS9
- Chain d
- eS28
Coloring options: