J3_6W6L_009

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6W6L|1|t|A|2375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6L_009 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1313

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6W6L|1|t|C|2372
6W6L|1|t|G|2373
6W6L|1|t|A|2374
6W6L|1|t|A|2375
6W6L|1|t|G|2376
6W6L|1|t|U|2377
6W6L|1|t|G|2378
*
6W6L|1|t|C|2784
6W6L|1|t|A|2785
6W6L|1|t|A|2786
*
6W6L|1|t|U|2798
6W6L|1|t|C|2799
6W6L|1|t|U|2800
6W6L|1|t|G|2801

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain h

60S ribosomal protein L34