J3_6W6L_016
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6W6L|1|t|A|4242
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6W6L_016 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.1439
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6W6L|1|t|C|4203
6W6L|1|t|U|4204
6W6L|1|t|C|4205
*
6W6L|1|t|G|4229
6W6L|1|t|A|4230
6W6L|1|t|G|4231
*
6W6L|1|t|C|4240
6W6L|1|t|A|4241
6W6L|1|t|A|4242
6W6L|1|t|A|4243
6W6L|1|t|A|4244
6W6L|1|t|G|4245
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L5
- Chain L
- 60S ribosomal protein L11
- Chain U
- 60S ribosomal protein L21
- Chain p
- 60S ribosomal protein L36a
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