J3_6W6P_018

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

6W6P|1|a|U|887, 6W6P|1|a|A|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6P_018 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1387

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6W6P|1|a|C|841
6W6P|1|a|U|842
6W6P|1|a|A|843
6W6P|1|a|A|844
*
6W6P|1|a|U|873
6W6P|1|a|G|874
6W6P|1|a|C|875
6W6P|1|a|A|876
6W6P|1|a|G|877
*
6W6P|1|a|C|884
6W6P|1|a|A|885
6W6P|1|a|U|886
6W6P|1|a|U|887
6W6P|1|a|A|888
6W6P|1|a|A|889
6W6P|1|a|G|890

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8