J3_6W6P_029

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

6W6P|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W6P_029 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1216

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6W6P|1|A|U|1380
6W6P|1|A|C|1381
6W6P|1|A|G|1382
6W6P|1|A|G|1383
6W6P|1|A|G|1384
6W6P|1|A|A|1385
6W6P|1|A|C|1386
*
6W6P|1|A|G|1417
6W6P|1|A|A|1418
6W6P|1|A|C|1419
6W6P|1|A|A|1420
6W6P|1|A|A|1421
*
6W6P|1|A|U|1438
6W6P|1|A|A|1439

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23