J3_6W77_012

3D structure

PDB id

6W77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactivated-high-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6W77|1|A|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6W77_012 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2637

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6W77|1|A|C|1237
6W77|1|A|A|1238
6W77|1|A|A|1239
6W77|1|A|U|1240
6W77|1|A|G|1241
*
6W77|1|A|C|1296
6W77|1|A|G|1297
6W77|1|A|U|1298
6W77|1|A|A|1299
6W77|1|A|G|1300
6W77|1|A|U|1301
6W77|1|A|C|1302
6W77|1|A|C|1303
*
6W77|1|A|G|1334
6W77|1|A|U|1335
6W77|1|A|C|1336
6W77|1|A|G|1337

Current chains

Chain A

RNA (1519-MER)

Nearby chains

Chain M

30S ribosomal protein S13