3D structure

PDB id
6W7N (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S-Inactive-low-Mg2+ Class A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
6W7N|1|A|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6W7N_004 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1351
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

6W7N|1|A|C|826
6W7N|1|A|U|827
6W7N|1|A|U|828
6W7N|1|A|G|829
*
6W7N|1|A|C|857
6W7N|1|A|G|858
6W7N|1|A|G|859
6W7N|1|A|A|860
6W7N|1|A|G|861
*
6W7N|1|A|C|868
6W7N|1|A|G|869
6W7N|1|A|U|870
6W7N|1|A|U|871
6W7N|1|A|A|872
6W7N|1|A|A|873
6W7N|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8

Coloring options:


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