J3_6WD3_032

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WD3_032 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1045

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WD3|1|1|G|1424
6WD3|1|1|G|1425
6WD3|1|1|G|1426
6WD3|1|1|A|1427
6WD3|1|1|C|1428
6WD3|1|1|G|1429
*
6WD3|1|1|C|1564
6WD3|1|1|C|1565
*
6WD3|1|1|G|1568
6WD3|1|1|A|1569
6WD3|1|1|A|1570
6WD3|1|1|A|1571
6WD3|1|1|A|1572
6WD3|1|1|G|1573
6WD3|1|1|C|1574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2