J3_6WDH_007

3D structure

PDB id

6WDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6WDH|1|1|C|1607, 6WDH|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WDH_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1842

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6WDH|1|1|C|1306
6WDH|1|1|A|1307
6WDH|1|1|A|1308
6WDH|1|1|G|1309
*
6WDH|1|1|C|1605
6WDH|1|1|C|1606
6WDH|1|1|C|1607
6WDH|1|1|A|1608
6WDH|1|1|A|1609
6WDH|1|1|A|1610
6WDH|1|1|C|1611
*
6WDH|1|1|G|1620
6WDH|1|1|U|1621
6WDH|1|1|G|1622

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34