J3_6WNT_007

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNT_007 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.1264

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6WNT|1|4|C|1426
6WNT|1|4|G|1427
6WNT|1|4|G|1428
6WNT|1|4|A|1429
6WNT|1|4|A|1430
6WNT|1|4|G|1431
*
6WNT|1|4|C|1753
6WNT|1|4|A|1754
6WNT|1|4|G|1755
*
6WNT|1|4|C|1767
6WNT|1|4|A|1768
6WNT|1|4|A|1769
6WNT|1|4|G|1770

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains