J3_6WNT_008

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6WNT|1|4|A|1737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WNT_008 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.1136

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6WNT|1|4|C|1434
6WNT|1|4|A|1435
6WNT|1|4|A|1436
6WNT|1|4|G|1437
*
6WNT|1|4|C|1733
6WNT|1|4|C|1734
6WNT|1|4|C|1735
6WNT|1|4|A|1736
6WNT|1|4|A|1737
6WNT|1|4|A|1738
6WNT|1|4|C|1739
*
6WNT|1|4|G|1748
6WNT|1|4|U|1749
6WNT|1|4|G|1750

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34