J3_6WNT_020
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WNT_020 not in the Motif Atlas
- Geometric match to J3_5J7L_069
- Geometric discrepancy: 0.0894
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6WNT|1|4|G|1552
6WNT|1|4|G|1553
6WNT|1|4|G|1554
6WNT|1|4|A|1555
6WNT|1|4|C|1556
6WNT|1|4|G|1557
*
6WNT|1|4|C|1692
6WNT|1|4|C|1693
*
6WNT|1|4|G|1696
6WNT|1|4|A|1697
6WNT|1|4|A|1698
6WNT|1|4|A|1699
6WNT|1|4|A|1700
6WNT|1|4|G|1701
6WNT|1|4|C|1702
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
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