J3_6WOO_002

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_002 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0969

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|A|760
6WOO|1|2|G|761
6WOO|1|2|A|762
6WOO|1|2|G|763
*
6WOO|1|2|C|773
6WOO|1|2|A|774
6WOO|1|2|G|775
*
6WOO|1|2|U|785
6WOO|1|2|C|786
6WOO|1|2|G|787
6WOO|1|2|A|788
6WOO|1|2|A|789
6WOO|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24