J3_6WOO_005

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1278

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6WOO|1|2|C|1161
6WOO|1|2|C|1162
6WOO|1|2|A|1163
6WOO|1|2|G|1164
*
6WOO|1|2|C|1581
6WOO|1|2|U|1582
6WOO|1|2|A|1583
6WOO|1|2|G|1584
6WOO|1|2|U|1585
6WOO|1|2|A|1586
6WOO|1|2|A|1587
*
6WOO|1|2|U|1609
6WOO|1|2|G|1610
6WOO|1|2|A|1611
6WOO|1|2|U|1612
6WOO|1|2|U|1613
6WOO|1|2|A|1614
6WOO|1|2|C|1615
6WOO|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain FF

uS7

Chain QQ

uS19

Chain cc

eS28