J3_6WOO_008

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6WOO|1|2|A|1217, 6WOO|1|2|G|1445, 6WOO|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1778

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|C|1215
6WOO|1|2|C|1216
6WOO|1|2|A|1217
6WOO|1|2|G|1218
6WOO|1|2|A|1219
6WOO|1|2|C|1220
*
6WOO|1|2|G|1263
6WOO|1|2|G|1264
6WOO|1|2|G|1265
6WOO|1|2|U|1266
6WOO|1|2|G|1267
*
6WOO|1|2|U|1442
6WOO|1|2|U|1443
6WOO|1|2|A|1444
6WOO|1|2|G|1445
6WOO|1|2|A|1446
6WOO|1|2|C|1447
6WOO|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain dd

uS14

Chain ff

eS31