J3_6WOO_018

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

6WOO|1|5|A|1065, 6WOO|1|5|U|1094, 6WOO|1|5|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_018 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.377

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|5|U|986
6WOO|1|5|U|987
*
6WOO|1|5|A|1062
6WOO|1|5|G|1063
6WOO|1|5|A|1064
6WOO|1|5|A|1065
6WOO|1|5|G|1066
*
6WOO|1|5|C|1092
6WOO|1|5|A|1093
6WOO|1|5|U|1094
6WOO|1|5|U|1095
6WOO|1|5|U|1096
6WOO|1|5|G|1097
6WOO|1|5|A|1098

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain F

uL30

Chain T

eL21

Chain b

eL29