J3_6WOO_020

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

6WOO|1|5|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_020 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0777

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6WOO|1|5|U|1479
6WOO|1|5|G|1480
6WOO|1|5|A|1481
6WOO|1|5|A|1482
6WOO|1|5|G|1483
6WOO|1|5|U|1484
6WOO|1|5|G|1485
*
6WOO|1|5|C|1857
6WOO|1|5|A|1858
6WOO|1|5|A|1859
*
6WOO|1|5|U|1871
6WOO|1|5|C|1872
6WOO|1|5|U|1873
6WOO|1|5|A|1874

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

eL19

Chain g

eL34