J3_6WOO_023

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_023 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1675

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6WOO|1|5|C|1631
6WOO|1|5|A|1632
*
6WOO|1|5|U|1641
6WOO|1|5|A|1642
6WOO|1|5|A|1643
6WOO|1|5|C|1644
6WOO|1|5|U|1645
*
6WOO|1|5|A|1810
6WOO|1|5|G|1811

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain Z

eL27

Chain g

eL34