J3_6WOO_027

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6WOO|1|5|A|2887, 6WOO|1|5|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WOO_027 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0963

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|5|U|2886
6WOO|1|5|A|2887
6WOO|1|5|U|2888
6WOO|1|5|C|2889
*
6WOO|1|5|G|2914
6WOO|1|5|U|2915
6WOO|1|5|U|2916
*
6WOO|1|5|A|2930
6WOO|1|5|C|2931
6WOO|1|5|U|2932
6WOO|1|5|A|2933
6WOO|1|5|A|2934
6WOO|1|5|U|2935
6WOO|1|5|A|2936

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14