J3_6WOO_036
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 6WOO|1|5|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_036 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1105
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|C|185
6WOO|1|5|U|186
6WOO|1|5|A|187
6WOO|1|5|U|188
6WOO|1|5|G|189
*
6WOO|1|5|C|205
6WOO|1|5|G|206
6WOO|1|5|U|207
6WOO|1|5|C|208
6WOO|1|5|A|209
6WOO|1|5|U|210
6WOO|1|5|A|211
6WOO|1|5|G|212
6WOO|1|5|A|213
6WOO|1|5|G|214
*
6WOO|1|5|C|226
6WOO|1|5|G|227
6WOO|1|5|U|228
6WOO|1|5|G|229
6WOO|1|5|U|230
6WOO|1|5|G|231
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain Y
- uL24
Coloring options: