J3_6WOO_045
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6WOO|1|8|U|60, 6WOO|1|8|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WOO_045 not in the Motif Atlas
- Homologous match to J3_8P4V_024
- Geometric discrepancy: 0.0755
- The information below is about J3_8P4V_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6WOO|1|8|A|44
6WOO|1|8|C|45
*
6WOO|1|8|G|58
6WOO|1|8|A|59
6WOO|1|8|U|60
6WOO|1|8|A|61
6WOO|1|8|C|62
6WOO|1|8|G|63
6WOO|1|8|U|64
*
6WOO|1|8|A|96
6WOO|1|8|A|97
6WOO|1|8|U|98
6WOO|1|8|C|99
6WOO|1|8|U|100
Current chains
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain X
- uL23
- Chain h
- uL29
- Chain j
- eL37
- Chain l
- eL39
Coloring options: