J3_6XA1_004
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6XA1|1|L5|C|1522, 6XA1|1|L5|G|1628
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XA1_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1521
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XA1|1|L5|U|1518
6XA1|1|L5|G|1519
6XA1|1|L5|A|1520
6XA1|1|L5|A2M|1521
6XA1|1|L5|C|1522
6XA1|1|L5|PSU|1523
6XA1|1|L5|A|1524
*
6XA1|1|L5|U|1609
6XA1|1|L5|A|1610
6XA1|1|L5|G|1611
*
6XA1|1|L5|C|1627
6XA1|1|L5|G|1628
6XA1|1|L5|A|1629
6XA1|1|L5|A|1630
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
- Chain NC
- Stalled Nascent chain
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