J3_6XA1_006

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6XA1|1|L5|A|2383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XA1_006 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0853

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6XA1|1|L5|C|2380
6XA1|1|L5|G|2381
6XA1|1|L5|A|2382
6XA1|1|L5|A|2383
6XA1|1|L5|G|2384
6XA1|1|L5|U|2385
6XA1|1|L5|G|2386
*
6XA1|1|L5|C|2792
6XA1|1|L5|A|2793
6XA1|1|L5|A|2794
*
6XA1|1|L5|U|2806
6XA1|1|L5|C|2807
6XA1|1|L5|U|2808
6XA1|1|L5|G|2809

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34