J3_6XA1_007
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAG*CC(A2M)UAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6XA1|1|L5|U|2775, 6XA1|1|L5|A|2776
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XA1_007 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0877
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XA1|1|L5|G|2389
6XA1|1|L5|A|2390
6XA1|1|L5|A|2391
6XA1|1|L5|G|2392
*
6XA1|1|L5|C|2772
6XA1|1|L5|C|2773
6XA1|1|L5|A2M|2774
6XA1|1|L5|U|2775
6XA1|1|L5|A|2776
6XA1|1|L5|U|2777
6XA1|1|L5|C|2778
*
6XA1|1|L5|G|2787
6XA1|1|L5|U|2788
6XA1|1|L5|C|2789
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: