J3_6XA1_013

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6XA1|1|L5|A|4434, 6XA1|1|L5|U|4435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XA1_013 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0873

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6XA1|1|L5|U|4433
6XA1|1|L5|A|4434
6XA1|1|L5|U|4435
6XA1|1|L5|C|4436
*
6XA1|1|L5|G|4461
6XA1|1|L5|U|4462
6XA1|1|L5|U|4463
*
6XA1|1|L5|A|4477
6XA1|1|L5|C|4478
6XA1|1|L5|U|4479
6XA1|1|L5|A|4480
6XA1|1|L5|A|4481
6XA1|1|L5|U|4482
6XA1|1|L5|A|4483

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23