J3_6XE0_013
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6XE0|1|W|C|48, 6XE0|1|W|A|50, 6XE0|1|W|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XE0_013 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.1054
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6XE0|1|W|G|46
6XE0|1|W|C|47
6XE0|1|W|C|48
6XE0|1|W|U|49
6XE0|1|W|A|50
6XE0|1|W|A|51
6XE0|1|W|C|52
*
6XE0|1|W|G|359
6XE0|1|W|G|360
6XE0|1|W|G|361
6XE0|1|W|G|362
6XE0|1|W|A|363
6XE0|1|W|A|364
6XE0|1|W|U|365
6XE0|1|W|A|366
6XE0|1|W|U|367
*
6XE0|1|W|A|393
6XE0|1|W|G|394
6XE0|1|W|C|395
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: