J3_6XE0_014
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 6XE0|1|W|U|653
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XE0_014 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.1756
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6XE0|1|W|C|586
6XE0|1|W|G|587
6XE0|1|W|G|588
*
6XE0|1|W|C|651
6XE0|1|W|U|652
6XE0|1|W|U|653
6XE0|1|W|G|654
6XE0|1|W|A|655
*
6XE0|1|W|U|751
6XE0|1|W|G|752
6XE0|1|W|A|753
6XE0|1|W|C|754
6XE0|1|W|G|755
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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