J3_6XII_032

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6XII|1|a|A|504, 6XII|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XII_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.103

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6XII|1|a|G|30
6XII|1|a|C|31
*
6XII|1|a|G|474
6XII|1|a|C|475
6XII|1|a|G|476
6XII|1|a|A|477
6XII|1|a|A|478
6XII|1|a|A|479
6XII|1|a|A|480
6XII|1|a|G|481
6XII|1|a|A|482
6XII|1|a|A|483
6XII|1|a|C|484
*
6XII|1|a|G|496
6XII|1|a|A|497
6XII|1|a|G|498
6XII|1|a|U|499
6XII|1|a|G|500
6XII|1|a|A|501
6XII|1|a|A|502
6XII|1|a|A|503
6XII|1|a|A|504
6XII|1|a|A|505
6XII|1|a|G|506
6XII|1|a|A|507
6XII|1|a|A|508
6XII|1|a|C|509
6XII|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20