J3_6XIQ_018

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

6XIQ|1|2|A|1217, 6XIQ|1|2|G|1445, 6XIQ|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XIQ_018 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.3301

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6XIQ|1|2|C|1215
6XIQ|1|2|C|1216
6XIQ|1|2|A|1217
6XIQ|1|2|G|1218
6XIQ|1|2|A|1219
6XIQ|1|2|C|1220
*
6XIQ|1|2|G|1263
6XIQ|1|2|G|1264
6XIQ|1|2|G|1265
6XIQ|1|2|U|1266
6XIQ|1|2|G|1267
*
6XIQ|1|2|U|1442
6XIQ|1|2|U|1443
6XIQ|1|2|A|1444
6XIQ|1|2|G|1445
6XIQ|1|2|A|1446
6XIQ|1|2|C|1447
6XIQ|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AT

RPS29A isoform 1