J3_6XIR_011

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

6XIR|1|1|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XIR_011 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.188

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6XIR|1|1|C|1631
6XIR|1|1|A|1632
*
6XIR|1|1|U|1641
6XIR|1|1|A|1642
6XIR|1|1|A|1643
6XIR|1|1|C|1644
6XIR|1|1|U|1645
*
6XIR|1|1|A|1810
6XIR|1|1|G|1811

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A