J3_6XIR_028
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 6XIR|1|3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XIR_028 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.1053
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XIR|1|3|C|9
6XIR|1|3|C|10
6XIR|1|3|A|11
6XIR|1|3|U|12
6XIR|1|3|A|13
6XIR|1|3|U|14
*
6XIR|1|3|A|66
6XIR|1|3|G|67
*
6XIR|1|3|U|111
6XIR|1|3|G|112
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- RPL5 isoform 1
- Chain I
- RPL10 isoform 1
- Chain T
- 60S ribosomal protein L21-A
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