J3_6XIR_031
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 6XIR|1|1|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XIR_031 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1351
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75408.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6XIR|1|1|C|185
6XIR|1|1|U|186
6XIR|1|1|A|187
6XIR|1|1|U|188
6XIR|1|1|G|189
*
6XIR|1|1|C|205
6XIR|1|1|G|206
6XIR|1|1|U|207
6XIR|1|1|C|208
6XIR|1|1|A|209
6XIR|1|1|U|210
6XIR|1|1|A|211
6XIR|1|1|G|212
6XIR|1|1|A|213
6XIR|1|1|G|214
*
6XIR|1|1|C|226
6XIR|1|1|G|227
6XIR|1|1|U|228
6XIR|1|1|G|229
6XIR|1|1|U|230
6XIR|1|1|G|231
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain C
- RPL4A isoform 1
- Chain Y
- 60S ribosomal protein L26-A
Coloring options: