J3_6XZA_018

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_018 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0505

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6XZA|1|A2|C|1298
6XZA|1|A2|G|1299
6XZA|1|A2|G|1300
6XZA|1|A2|A|1301
6XZA|1|A2|A|1302
6XZA|1|A2|G|1303
*
6XZA|1|A2|C|1625
6XZA|1|A2|A|1626
6XZA|1|A2|G|1627
*
6XZA|1|A2|C|1639
6XZA|1|A2|A|1640
6XZA|1|A2|A|1641
6XZA|1|A2|G|1642

Current chains

Chain A2

23S rRNA

Nearby chains