J3_6XZA_034

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZA_034 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0462

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6XZA|1|A2|G|1424
6XZA|1|A2|G|1425
6XZA|1|A2|G|1426
6XZA|1|A2|A|1427
6XZA|1|A2|C|1428
6XZA|1|A2|G|1429
*
6XZA|1|A2|C|1564
6XZA|1|A2|C|1565
*
6XZA|1|A2|G|1568
6XZA|1|A2|A|1569
6XZA|1|A2|A|1570
6XZA|1|A2|A|1571
6XZA|1|A2|A|1572
6XZA|1|A2|G|1573
6XZA|1|A2|C|1574

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2