J3_6YDP_004

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YDP_004 not in the Motif Atlas

Geometric match to J3_4LFB_003

Geometric discrepancy: 0.1355

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6YDP|1|AA|A|549
6YDP|1|AA|G|550
6YDP|1|AA|G|551
6YDP|1|AA|A|552
*
6YDP|1|AA|U|719
6YDP|1|AA|A|720
6YDP|1|AA|C|721
*
6YDP|1|AA|G|781
6YDP|1|AA|G|782
6YDP|1|AA|A|783
6YDP|1|AA|U|784

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

uS9m

Chain AV

fMet-tRNAMet (P site)