J3_6YLY_004
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6YLY|1|1|A|817, 6YLY|1|1|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YLY_004 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.1959
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YLY|1|1|U|814
6YLY|1|1|G|815
6YLY|1|1|A|816
6YLY|1|1|A|817
6YLY|1|1|C|818
6YLY|1|1|U|819
6YLY|1|1|A|820
*
6YLY|1|1|U|905
6YLY|1|1|A|906
6YLY|1|1|G|907
*
6YLY|1|1|C|923
6YLY|1|1|G|924
6YLY|1|1|A|925
6YLY|1|1|A|926
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: