J3_6YPU_004
3D structure
- PDB id
- 6YPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAG*CGCAG*CGAUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6YPU|1|2|U|868
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YPU_004 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1525
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6YPU|1|2|C|823
6YPU|1|2|U|824
6YPU|1|2|A|825
6YPU|1|2|G|826
*
6YPU|1|2|C|854
6YPU|1|2|G|855
6YPU|1|2|C|856
6YPU|1|2|A|857
6YPU|1|2|G|858
*
6YPU|1|2|C|865
6YPU|1|2|G|866
6YPU|1|2|A|867
6YPU|1|2|U|868
6YPU|1|2|A|869
6YPU|1|2|A|870
6YPU|1|2|G|871
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain f
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S8
- Chain v
- 30S ribosomal protein S21
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