J3_6YPU_005

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6YPU|1|2|U|50, 6YPU|1|2|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YPU_005 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0846

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6YPU|1|2|G|48
6YPU|1|2|C|49
6YPU|1|2|U|50
6YPU|1|2|U|51
6YPU|1|2|A|52
6YPU|1|2|A|53
6YPU|1|2|C|54
*
6YPU|1|2|G|355
6YPU|1|2|G|356
6YPU|1|2|G|357
6YPU|1|2|G|358
6YPU|1|2|A|359
6YPU|1|2|A|360
6YPU|1|2|U|361
6YPU|1|2|A|362
6YPU|1|2|U|363
*
6YPU|1|2|A|389
6YPU|1|2|G|390
6YPU|1|2|C|391

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16